cBioPortal / icebox

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SVs associated with profile "coadread_tcga_pan_can_atlas_2018_structural_variant" appear missing #341

Open alisman opened 2 years ago

alisman commented 2 years ago

Following curl responds empty. Which is what explains

curl 'https://beta.cbioportal.org/api/structural-variant/fetch' \ -H 'authority: beta.cbioportal.org' \ -H 'accept: application/json' \ -H 'accept-language: en-US,en;q=0.9' \ -H 'content-type: application/json' \ -H 'cookie: _ga=GA1.2.1629202144.1632427001; _ga_0JZ9C3M56S=GS1.1.1642187102.15.0.1642187102.0; amplitude_id_fef1e872c952688acd962d30aa545b9ecbioportal.org=eyJkZXZpY2VJZCI6IjljY2MxYTI5LTkzMGMtNDliNS1hMWJjLWVlMGNhYTQ1NGMwMFIiLCJ1c2VySWQiOm51bGwsIm9wdE91dCI6ZmFsc2UsInNlc3Npb25JZCI6MTY1MTY4NTA2NjYyNiwibGFzdEV2ZW50VGltZSI6MTY1MTY4NjE4NDI4MSwiZXZlbnRJZCI6MTcxLCJpZGVudGlmeUlkIjoxMywic2VxdWVuY2VOdW1iZXIiOjE4NH0=; _gid=GA1.2.951442738.1653513231; JSESSIONID=17DA44F592899C8F2ADE842CFF5604D8; _gat=1' \ -H 'origin: https://beta.cbioportal.org' \ -H 'referer: https://beta.cbioportal.org/patient?studyId=coadread_tcga_pan_can_atlas_2018&caseId=TCGA-F5-6864' \ -H 'sec-ch-ua: " Not A;Brand";v="99", "Chromium";v="101", "Google Chrome";v="101"' \ -H 'sec-ch-ua-mobile: ?0' \ -H 'sec-ch-ua-platform: "macOS"' \ -H 'sec-fetch-dest: empty' \ -H 'sec-fetch-mode: cors' \ -H 'sec-fetch-site: same-origin' \ -H 'user-agent: Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_7) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/101.0.4951.64 Safari/537.36' \ --data-raw '{"sampleMolecularIdentifiers":[{"molecularProfileId":"coadread_tcga_pan_can_atlas_2018_structural_variants","sampleId":"TCGA-F5-6864-01"}]}' \ --compressed

sbabyanusha commented 2 years ago

@alisman this issue is being taken care of. I will update you once this study is imported into the portal. You can tag me if anything comes up regarding SV.