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cBioPortal / icebox

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Visualizing case counts/frequencies of cases with multiple distant mets on study view #393

Open inodb opened 2 years ago

inodb commented 2 years ago

Was discussing this with Chris Fong and Michele Waters. For several studies we now have a clinical attribute indicating where the metastatic site(s) is/are for each patient. See e.g. GENIE BPC NSCLC: https://genie-private.cbioportal.org/study/summary?id=nsclc_public_genie_bpc

Screen Shot 2022-09-16 at 4 23 30 PM

It might be cleaner to show these in a single table like e.g. in our genes table so you can quickly see the frequencies. One can also use the selection tool to select the union or the intersection of multiple (since one can have multiple metastases):

Screen Shot 2022-09-16 at 4 27 23 PM
jjgao commented 2 years ago

Maybe save the mets data as a separate generic assay profile and then use the code by @dippindots to show a table in study view...