cBioPortal / icebox

very low priority issues
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Add validation rule for uncalled mutations #478

Open inodb opened 1 year ago

inodb commented 1 year ago

There should never be mutations that are in both data_mutations.txt and data_mutations_uncalled.txt. The uncalled profile contains all mutations that weren't called, so it is mutually exclusive with the file that contains called mutations. It would be nice to have a check in the validator that confirms this. The logic should be something like:

For test files you can use:

Follow up ticket to: https://github.com/cBioPortal/cbioportal/issues/10126

skrivit commented 1 year ago

Hi, I'd like to work on this. Does it need to be assigned to me?