Open onursumer opened 8 years ago
@jjgao @JiaoJiao123 If we directly map stop_gained, stop_lost, initiator_codon_variant, etc. to truncating mutation, their display value in the table will be Truncating
. Is this what we want?
Maybe we should display them as Stop Gain
, Stop Lost
, etc. but just classify them as truncating mutations. What do you think?
We can do the following mapping accroding to the TCGA MAF standard (https://wiki.nci.nih.gov/display/TCGA/Mutation+Annotation+Format+(MAF)+Specification).
stop_gained => Nonsense_Mutation stop_lost => Nonstop_Mutation initiator_codon_variant => Translation_Start_Site synonymous_variant => Silent
feature_truncation is truncating
Looks like we are still missing some of the mutation types: