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caceres-lab / InvFEST-code

Visual platform for human polymorphic inversions
Apache License 2.0
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0-based coordinates for segmental duplications #23

Open soniacasillas opened 9 years ago

soniacasillas commented 9 years ago

Table seg_dups is 0-based. When displayed in the "Breakpoints" section, move the first position of each annotation 1nt forward and calculate length as end_coord - start_coord.

Check implications with analyses. Check refseq_genes table.

soniacasillas commented 9 years ago

Coordinates are ok in InvFEST

cacereslab commented 6 years ago

I think coordinates of SDs shown in InvFEST are still 0-based and do not match those in UCSC, although it actually might be a problem of how UCSC calculates them