I have Resfinder installed in a Conda environment and whe I run it I have this error
run_resfinder.py -o /media/microviable/SeagateExpansion/Biobakery_Results/Ser02-ABBiotics_E_rarefied/Resfinder -l 0.6 -t 6 --acquired --point -s "Other" -ifq /media/microviable/SeagateExpansion/Biobakery_Results/Ser02-ABBiotics_E/kneaddata/main/ Traceback (most recent call last): File "/home/microviable/bin/run_resfinder.py", line 8, in <module> from cge.resfinder import ResFinder File "/home/microviable/Programas/resfinder/cge/resfinder.py", line 14, in <module> from .output.table import TableResults File "/home/microviable/Programas/resfinder/cge/output/table.py", line 2, in <module> from .orderedset import OrderedSet File "/home/microviable/Programas/resfinder/cge/output/orderedset.py", line 20, in <module> class OrderedSet(collections.MutableSet): AttributeError: module 'collections' has no attribute 'MutableSet'
I have Resfinder installed in a Conda environment and whe I run it I have this error
run_resfinder.py -o /media/microviable/SeagateExpansion/Biobakery_Results/Ser02-ABBiotics_E_rarefied/Resfinder -l 0.6 -t 6 --acquired --point -s "Other" -ifq /media/microviable/SeagateExpansion/Biobakery_Results/Ser02-ABBiotics_E/kneaddata/main/ Traceback (most recent call last): File "/home/microviable/bin/run_resfinder.py", line 8, in <module> from cge.resfinder import ResFinder File "/home/microviable/Programas/resfinder/cge/resfinder.py", line 14, in <module> from .output.table import TableResults File "/home/microviable/Programas/resfinder/cge/output/table.py", line 2, in <module> from .orderedset import OrderedSet File "/home/microviable/Programas/resfinder/cge/output/orderedset.py", line 20, in <module> class OrderedSet(collections.MutableSet): AttributeError: module 'collections' has no attribute 'MutableSet'