search

cafferychen777 / ggpicrust2

Make Picrust2 Output Analysis and Visualization Easier
https://cafferychen777.github.io/ggpicrust2/
Other
91 stars 11 forks source link

All my pathway results are NA #106

Open Elixir0822 opened 2 months ago

Elixir0822 commented 2 months ago

Hello @cafferychen777 All my pathway results are NA, please help me see how to solve the problem. 20240418165140

daa_annotated_sub_method_results_df <-

  • pathway_annotation(pathway = "KO",
  • daa_results_df = daa_results_df,
  • ko_to_kegg = TRUE) Starting pathway annotation... DAA results data frame is not null. Proceeding... KO to KEGG is set to TRUE. Proceeding with KEGG pathway annotations... We are connecting to the KEGG database to get the latest results, please wait patiently.

The number of statistically significant pathways exceeds the database's query limit. Please consider breaking down the analysis into smaller queries or selecting a subset of pathways for further investigation.

Returning DAA results filtered annotation data frame...