Thank you so much for this package -- it's been really helpful for visualisations!
This is not a big issue, but I'm trying to adjust the visualisations (colours, text size, etc) and not sure whether these functions are compatible with the usual ggplot functions?
For example, this works great:
pathway_pca(abundance = metacyc_abundance %>% column_to_rownames("pathway"),
metadata = metadata, group = "Plot")
But when I try to adjust with custom colours, nothing changes.
Thank you so much for this package -- it's been really helpful for visualisations!
This is not a big issue, but I'm trying to adjust the visualisations (colours, text size, etc) and not sure whether these functions are compatible with the usual ggplot functions?
For example, this works great: pathway_pca(abundance = metacyc_abundance %>% column_to_rownames("pathway"), metadata = metadata, group = "Plot")
But when I try to adjust with custom colours, nothing changes.
plot_colors <- c("#DD5129", "#FAB255", "#0F7BA2", "#43B284", "#4c2f61") pca_picrust <- pathway_pca(abundance = metacyc_abundance %>% column_to_rownames("pathway"), metadata = metadata, group = "Plot") pca_picrust + scale_color_manual(values = plot_colors)