Error in `ggplot_add()`

[luozhy88]

why?

[luozhy88]

my R version 4.2.3

[cafferychen777]

I think you forgot to set p_values_bar = TRUE. Maybe when you encounter difficulties, you should firstly check the file. The CRAN file is the necessary thing for R learner

[cafferychen777]

Hello @luozhy88 ,

If you're still having problems, I suggest you run each individual function to solve the problem.

Best regards

[cafferychen777]

I ran the code same as you just now and did't find any problem.

[luozhy88]

Error in h(simpleError(msg, call)) : error in evaluating the argument 'physeq' in selecting a method for function 'taxa_are_rows': invalid class “otu_table” object: OTU abundance data must have non-zero dimensions.

[luozhy88]

[luozhy88]

I think you can update you git

[cafferychen777]

ggpicrust2() and pathway_errorbar() use different select parameter, you can check it in ggpicrust2() function. The select you use in ggpicrust2 won't be transfered to pathway_errorbar().

[luozhy88]

[luozhy88]

[cafferychen777]

Please set select= NULL, because there are less than 30 statistically significant pathway in sample data.

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发件人: luozhy88 @.> 发送时间: Monday, April 3, 2023 11:07:28 PM 收件人: cafferychen777/ggpicrust2 @.> 抄送: Caffery Yang @.>; Comment @.> 主题: Re: [cafferychen777/ggpicrust2] Error in ggplot_add() (Issue #5)

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[luozhy88]

it works! but it no show barplot.why?

[luozhy88]

[cafferychen777]

I guess I know the Error in ggplot_add(): ! Can't add e2 to a object. problem.

Please

library(patchwork)