Implements the Tsetlin Machine, Coalesced Tsetlin Machine, Convolutional Tsetlin Machine, Regression Tsetlin Machine, and Weighted Tsetlin Machine, with support for continuous features, drop clause, Type III Feedback, focused negative sampling, multi-task classifier, autoencoder, literal budget, and one-vs-one multi-class classifier. TMU is written in Python with wrappers for C and CUDA-based clause evaluation and updating.
Building editable for tmu (pyproject.toml) ... error
error: subprocess-exited-with-error
× Building editable for tmu (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [209 lines of output]
generating ./tmu/tmulib.c
(already up-to-date)
the current directory is '/data/tmp/tmu'
running build_ext
building 'tmu.tmulib' extension
x86_64-linux-gnu-gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/data/tmp/tmu/tmu/lib/include -I/usr/include/python3.10 -c tmu/tmulib.c -o ./tmu/tmulib.o -O3 -mrdrnd
tmu/tmulib.c: In function ‘cb_type_i_feedback’:
tmu/tmulib.c:891:122: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
891
if (clause_output && cb_number_of_include_actions(ta_state, j, number_of_literals, number_of_state_bits) <= max_included_literals) {
^~
tmu/tmulib.c:893:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
893
for (int k = 0; k < number_of_ta_chunks; ++k) {
^
tmu/tmulib.c:907:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
907
for (int k = 0; k < number_of_ta_chunks; ++k) {
^
tmu/tmulib.c: In function ‘cb_type_ii_feedback’:
tmu/tmulib.c:949:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
949
for (int k = 0; k < number_of_ta_chunks; ++k) {
^
tmu/tmulib.c: In function ‘cb_type_iii_feedback’:
tmu/tmulib.c:1009:59: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
1009
for (int k = 0; k < number_of_ta_chunks; ++k) {
^
tmu/tmulib.c:1021:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
1021
for (int k = 0; k < number_of_ta_chunks; ++k) {
^
tmu/tmulib.c:1031:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
1031
for (int k = 0; k < number_of_ta_chunks; ++k) {
^
tmu/tmulib.c:1063:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
1063
for (int k = 0; k < number_of_ta_chunks; ++k) {
^
tmu/tmulib.c: In function ‘cb_initialize_incremental_clause_calculation’:
tmu/tmulib.c:1122:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
1122
for (int k = 0; k < number_of_ta_chunks; ++k) {
^
tmu/tmulib.c:1113:22: warning: variable ‘filter’ set but not used [-Wunused-but-set-variable]
1113
unsigned int filter;
^~
tmu/tmulib.c: In function ‘cb_calculate_clause_outputs_incremental_batch’:
tmu/tmulib.c:1214:22: warning: variable ‘filter’ set but not used [-Wunused-but-set-variable]
1214
unsigned int filter;
^~
tmu/tmulib.c: In function ‘cb_calculate_clause_outputs_incremental’:
tmu/tmulib.c:1267:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
1267
^
tmu/tmulib.c:1281:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
1281
for (int k = 0; k < number_of_ta_chunks; ++k) {
^
tmu/tmulib.c:1250:22: warning: variable ‘filter’ set but not used [-Wunused-but-set-variable]
1250
unsigned int filter;
^~
tmu/tmulib.c: In function ‘cb_included_literals’:
tmu/tmulib.c:1378:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
1378
for (int k = 0; k < number_of_ta_chunks; k++) {
^
tmu/tmulib.c:1383:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
1383
for (int k = 0; k < number_of_ta_chunks; k++) {
^
tmu/tmulib.c: In function ‘cb_number_of_include_actions’:
tmu/tmulib.c:1408:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
1408
for (int k = 0; k < number_of_ta_chunks-1; ++k) {
^
tmu/tmulib.c: In function ‘tmu_produce_autoencoder_example’:
tmu/tmulib.c:1484:168: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
1484
if ((indptr_col[active_output[target]+1] - indptr_col[active_output[target]] == 0)
In file included from /usr/include/stdlib.h:833,
from /usr/include/python3.10/Python.h:34,
from tmu/tmulib.c:57:
/usr/include/x86_64-linux-gnu/bits/stdlib-bsearch.h:21:24: note: expected ‘__compar_fn_t’ {aka ‘int (*)(const void *, const void *)’} but argument is of type ‘unsigned int (*)(const void *, const void *)’
21 | __compar_fn_t __compar)
| ~~~~~~~~~~~~~~^~~~~~~~
tmu/tmulib.c:1523:65: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
1523 | for (int k = indptr_row[row]; k < indptr_row[row+1]; ++k) {
| ^
tmu/tmulib.c: In function ‘cbs_type_i_feedback’:
tmu/tmulib.c:1926:22: warning: unused variable ‘number_of_ta_chunks’ [-Wunused-variable]
1926 | unsigned int number_of_ta_chunks = (number_of_literals-1)/32 + 1;
| ^~~~~~~~~~~~~~~~~~~
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 ./tmu/tmulib.o -o ./tmu/tmulib.cpython-310-x86_64-linux-gnu.so
not modified: 'build/tmu/tmulib.c'
generating build/tmu/tmulib.c
(already up-to-date)
running editable_wheel
creating /tmp/pip-wheel-qzxo5pcv/.tmp-tkyet1l9/tmu.egg-info
writing /tmp/pip-wheel-qzxo5pcv/.tmp-tkyet1l9/tmu.egg-info/PKG-INFO
writing dependency_links to /tmp/pip-wheel-qzxo5pcv/.tmp-tkyet1l9/tmu.egg-info/dependency_links.txt
writing requirements to /tmp/pip-wheel-qzxo5pcv/.tmp-tkyet1l9/tmu.egg-info/requires.txt
writing top-level names to /tmp/pip-wheel-qzxo5pcv/.tmp-tkyet1l9/tmu.egg-info/top_level.txt
writing manifest file '/tmp/pip-wheel-qzxo5pcv/.tmp-tkyet1l9/tmu.egg-info/SOURCES.txt'
reading manifest file '/tmp/pip-wheel-qzxo5pcv/.tmp-tkyet1l9/tmu.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file '/tmp/pip-wheel-qzxo5pcv/.tmp-tkyet1l9/tmu.egg-info/SOURCES.txt'
creating '/tmp/pip-wheel-qzxo5pcv/.tmp-tkyet1l9/tmu-0.8.1.dist-info'
creating /tmp/pip-wheel-qzxo5pcv/.tmp-tkyet1l9/tmu-0.8.1.dist-info/WHEEL
Traceback (most recent call las
files, mapping = self._run_build_commands(dist_name, unpacked, lib, tmp)
File "/tmp/pip-build-env-5tia0lvc/overlay/local/lib/python3.10/dist-packages/setuptools/command/editable_wheel.py", line 267, in _run_build_commands
self._configure_build(dist_name, unpacked_wheel, build_lib, tmp_dir)
File "/tmp/pip-build-env-5tia0lvc/overlay/local/lib/python3.10/dist-packages/setuptools/command/editable_wheel.py", line 217, in _configure_build
install = dist.reinitialize_command("install", reinit_subcommands=True)
File "/usr/lib/python3.10/distutils/dist.py", line 938, in reinitialize_command
command = self.get_command_obj(command_name)
File "/usr/lib/python3.10/distutils/dist.py", line 858, in get_command_obj
cmd_obj = self.command_obj[command] = klass(self)
File "/tmp/pip-build-env-5tia0lvc/overlay/local/lib/python3.10/dist-packages/setuptools/__init__.py", line 174, in __init__
super().__init__(dist)
File "/usr/lib/python3.10/distutils/cmd.py", line 62, in __init__
self.initialize_options()
File "/tmp/pip-build-env-5tia0lvc/overlay/local/lib/python3.10/dist-packages/setuptools/command/install.py", line 50, in initialize_options
orig.install.initialize_options(self)
File "/usr/lib/python3.10/_distutils_system_mod.py", line 33, in initialize_options
super().initialize_options()
TypeError: super(type, obj): obj must be an instance or subtype of type
/usr/lib/python3.10/distutils/dist.py:985: _DebuggingTips: Problem in editable installation.
!!
********************************************************************************
An error happened while installing `tmu` in editable mode.
The following steps are recommended to help debug this problem:
- Try to install the project normally, without using the editable mode.
Does the error still persist?
(If it does, try fixing the problem before attempting the editable mode).
- If you are using binary extensions, make sure you have all OS-level
dependencies installed (e.g. compilers, toolchains, binary libraries, ...).
- Try the latest version of setuptools (maybe the error was already fixed).
- If you (or your project dependencies) are using any setuptools extension
or customization, make sure they support the editable mode.
After following the steps above, if the problem still persists and
you think this is related to how setuptools handles editable installations,
please submit a reproducible example
(see https://stackoverflow.com/help/minimal-reproducible-example) to:
https://github.com/pypa/setuptools/issues
See https://setuptools.pypa.io/en/latest/userguide/development_mode.html for details.
********************************************************************************
!!
cmd_obj.run()
Traceback (most recent call last):
File "/usr/local/lib/python3.10/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
main()
File "/usr/local/lib/python3.10/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "/usr/local/lib/python3.10/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 273, in build_editable
return hook(wheel_directory, config_settings, metadata_directory)
File "/tmp/pip-build-env-5tia0lvc/overlay/local/lib/python3.10/dist-packages/setuptools/build_meta.py", line 436, in build_editable
return self._build_with_temp_dir(
File "/tmp/pip-build-env-5tia0lvc/overlay/local/lib/python3.10/dist-packages/setuptools/build_meta.py", line 389, in _build_with_temp_dir
self.run_setup()
File "/tmp/pip-build-env-5tia0lvc/overlay/local/lib/python3.10/dist-packages/setuptools/build_meta.py", line 311, in run_setup
exec(code, locals())
File "<string>", line 76, in <module>
File "/tmp/pip-build-env-5tia0lvc/overlay/local/lib/python3.10/dist-packages/setuptools/__init__.py", line 103, in setup
return distutils.core.setup(**attrs)
File "/usr/lib/python3.10/distutils/core.py", line 148, in setup
dist.run_commands()
File "/usr/lib/python3.10/distutils/dist.py", line 966, in run_commands
self.run_command(cmd)
File "/tmp/pip-build-env-5tia0lvc/overlay/local/lib/python3.10/dist-packages/setuptools/dist.py", line 963, in run_command
super().run_command(command)
File "/usr/lib/python3.10/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/tmp/pip-build-env-5tia0lvc/overlay/local/lib/python3.10/dist-packages/setuptools/command/editable_wheel.py", line 156, in run
self._create_wheel_file(bdist_wheel)
File "/tmp/pip-build-env-5tia0lvc/overlay/local/lib/python3.10/dist-packages/setuptools/command/editable_wheel.py", line 345, in _create_wheel_file
files, mapping = self._run_build_commands(dist_name, unpacked, lib, tmp)
File "/tmp/pip-build-env-5tia0lvc/overlay/local/lib/python3.10/dist-packages/setuptools/command/editable_wheel.py", line 267, in _run_build_commands
self._configure_build(dist_name, unpacked_wheel, build_lib, tmp_dir)
File "/tmp/pip-build-env-5tia0lvc/overlay/local/lib/python3.10/dist-packages/setuptools/command/editable_wheel.py", line 217, in _configure_build
install = dist.reinitialize_command("install", reinit_subcommands=True)
File "/usr/lib/python3.10/distutils/dist.py", line 938, in reinitialize_command
command = self.get_command_obj(command_name)
File "/usr/lib/python3.10/distutils/dist.py", line 858, in get_command_obj
cmd_obj = self.command_obj[command] = klass(self)
File "/tmp/pip-build-env-5tia0lvc/overlay/local/lib/python3.10/dist-packages/setuptools/__init__.py", line 174, in __init__
super().__init__(dist)
File "/usr/lib/python3.10/distutils/cmd.py", line 62, in __init__
self.initialize_options()
File "/tmp/pip-build-env-5tia0lvc/overlay/local/lib/python3.10/dist-packages/setuptools/command/install.py", line 50, in initialize_options
orig.install.initialize_options(self)
File "/usr/lib/python3.10/_distutils_system_mod.py", line 33, in initialize_options
super().initialize_options()
TypeError: super(type, obj): obj must be an instance or subtype of type
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building editable for tmu
Failed to build tmu
ERROR: Could not build wheels for tmu, which is required to install pyproject.toml-based projects
perara
commented
10 months ago
Building editable for tmu (pyproject.toml) ... error error: subprocess-exited-with-error
~tmu/tmulib.c: In function ‘cb_calculate_clause_outputs_incremental_batch’: tmu/tmulib.c:1214:22: warning: variable ‘filter’ set but not used [-Wunused-but-set-variable] 1214~tmu/tmulib.c: In function ‘cb_calculate_clause_outputs_incremental’: tmu/tmulib.c:1267:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1267~tmu/tmulib.c: In function ‘cb_included_literals’: tmu/tmulib.c:1378:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1378~~note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building editable for tmu Failed to build tmu ERROR: Could not build wheels for tmu, which is required to install pyproject.toml-based projects