caitiecollins / treeWAS

treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes
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about the p-values #28

Closed zhaoxvwahaha closed 5 years ago

zhaoxvwahaha commented 5 years ago

treeWAS is a very fantastic tool, thank you for developing it, now I have a quick question about the p-value (1) what the threshold of p-value should I selected to confirm the associated markers? (2) have all 3 p-values been corrected by like Bonferroni methods? i.e. the (p-value of treeWAS)= (raw p-value)/(number of snps) ?