gene presence absence and input simple question

caitiecollins / treeWAS

treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes

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gene presence absence and input simple question #36

Closed camilo-monge closed 5 years ago

camilo-monge commented 5 years ago

Hello! Dumb question here. I am trying to use the tool using a gene presence/absence matrix and a binomial phenotype i.e. inclusion and exclusion groups. I wanted to know if it is correct to use 0 as gene absence and 1 as gene presence, and 1 as inclusion group and 0 as exclusion group. I already ran the program and seams to have worked as I expected, buy wanted to be sure. Thanks a lot!

camilo-monge commented 5 years ago

I think I figured it out from the print, sorry to bother you!