Closed genec1 closed 1 year ago
processNanostringData doesn't currently allow for RCC file names to be supplied as input (it does file directories, txt files, csv files, etc). A simple edit to the function allows for this extra flexibility:
processNanostringData
colnames(dat$dict) <- gsub("\\.| ", "", colnames(dat$dict)) } else if (file.extension %in% c(".RCC", ".rcc")) { fileNames <- nsFiles[ grep("\\.rcc$", tolower(nsFiles)) ] cat("\nReading in .RCC files......", file = logfile, append = TRUE) dat <- read_merge_rcc(fileNames, includeQC, logfile) } else { if (file.extension %in% c(".zip", ".ZIP")) {
Thanks for this suggestion! Looks like everything is working, please let me know if any trouble pops up.
processNanostringData
doesn't currently allow for RCC file names to be supplied as input (it does file directories, txt files, csv files, etc). A simple edit to the function allows for this extra flexibility: