Pass additional parameters to `limma::lmFit` in `runLimmaAnalysis`

calebclass / NanoTube

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Pass additional parameters to `limma::lmFit` in `runLimmaAnalysis` #4

Closed genec1 closed 1 year ago

genec1 commented 1 year ago

I've been doing some more complex experiment designs, using "block" and "correlation" arguments to limma::lmFit. This is easily accommodated by allowing the pass-through of optional arguments using ...:


runLimmaAnalysis <- function (dat, groups = NULL, base.group = NULL, design = NULL, ...)
#...
    fit <- limma::lmFit(dat.limma, design=design, ...)
#...