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calebclass / Shiny-NanoTube

A web app for easier NanoString gene expression analysis
GNU General Public License v3.0
2 stars 2 forks source link

Loading my RCC files in zip fails #5

Closed ZheFrench closed 1 year ago

ZheFrench commented 1 year ago

I just want to load raw Rcc files and get an export with normalized values with RUVg n a matrix.

But it fails to load them. Why ? Any help would be more than welcome.

RCC header looks like the following.

<Header>
FileVersion,1.7
SoftwareVersion,4.0.0.3
</Header>
 runApp('Desktop/NANO/Shiny-NanoTube')

Listening on http://127.0.0.1:6389
[1] "/home/jp/Desktop/NANO/Shiny-NanoTube"

Reading in .RCC files......
Checking codeset contents......
Checked gene name consistency in .RCC files.Warning: Error in [[: subscript out of bounds
  154: <Anonymous>
  153: read_merge_rcc
  152: processNanostringData
  148: eventReactiveValueFunc [/home/jp/Desktop/NANO/Shiny-NanoTube/server.R#73]
  104: ns
   97: renderText [/home/jp/Desktop/NANO/Shiny-NanoTube/server.R#155]
   96: func
   83: renderFunc
   82: output$numSamps
    1: runApp
ZheFrench commented 1 year ago

The zip was containing a folder. Without the folder , it worked perfectly well.