Open zjy0419 opened 2 years ago
@vincent6liu would you mind commenting here?
Same installation issue here - 'maegatk-indel: command not found'. Seems that the PyPi package is not up-to-date. When I clone from github I and try to install from the clone I get (using python 3.8): ` $ pip install -e maegatk Obtaining file:///home/peter/git/maegatk Preparing metadata (setup.py) ... error error: subprocess-exited-with-error
× python setup.py egg_info did not run successfully.
│ exit code: 1
╰─> [30 lines of output]
Traceback (most recent call last):
File "
note: This error originates from a subprocess, and is likely not a problem with pip. error: metadata-generation-failed
× Encountered error while generating package metadata. ╰─> See above for output.
note: This is an issue with the package mentioned above, not pip. hint: See above for details.`
I was able to clone the repo and install maegatk-indel via pip install -e .
for a new version of python:
python --version
Python 3.11.6
maegatk-indel --help
Usage: maegatk-indel [OPTIONS]
maegatk: a Maester genome toolkit.
INDEL calling
I'm not sure the best way to proceed here at the moment...
Hi,
I was wondering the relationship between maegatk and maegatk-indel, is the output of the former the input of the latter?
In addition, after installing this package by 'pip3 install maegatk' ,I can use maegatk, but cannot use maegatk-indel (bash: maegatk-indel: command not found...). What should I do to make it work?
Thank you very much!