Handle overlap and variant calling

caleblareau / mgatk

mgatk: mitochondrial genome analysis toolkit

http://caleblareau.github.io/mgatk

MIT License

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Closed vincent6liu closed 3 years ago

vincent6liu commented 3 years ago

Added option to handle read pair overlap so coverage is not double counted. Added variant calling to the end of pipeline.

caleblareau commented 3 years ago

Reviewed-- looks great! Thanks @vincent6liu