search

caleblareau / mgatk

mgatk: mitochondrial genome analysis toolkit
http://caleblareau.github.io/mgatk
MIT License
101 stars 27 forks source link

empty bam file #8

Closed caleblareau closed 5 years ago

caleblareau commented 6 years ago

messes everything up (literally 0 mito reads); handle as an edge case in probably all scripts unfortunately... https://github.com/aryeelab/mgatk/tree/master/Pypkg/mgatk/mgatk/bin/python

That or just remove it from the first

caleblareau commented 5 years ago

Implemented 1ac9cc9 via the "just remove it first" in part of the chromosome verification step