fails to load example project

[vickerse1]

running from anaconda prompt in Windows 10, gives this error (Buffer dtype mismatch, expected 'const int64_t' but got 'long':

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Traceback (most recent call last): File "c:\users\mccormick lab\documents\python\snub\snub\gui\main.py", line 362, in open self.load_project(project_dir) File "c:\users\mccormick lab\documents\python\snub\snub\gui\main.py", line 381, in load_project project_tab = ProjectTab(project_directory) File "c:\users\mccormick lab\documents\python\snub\snub\gui\main.py", line 107, in init self.update_current_time(self.current_time) File "c:\users\mccormick lab\documents\python\snub\snub\gui\main.py", line 251, in update_current_time self.panelStack.update_current_time(current_time) File "c:\users\mccormick lab\documents\python\snub\snub\gui\stacks\panel.py", line 52, in update_current_time panel.update_current_time(t) File "c:\users\mccormick lab\documents\python\snub\snub\gui\panels\scatter.py", line 130, in update_current_time nodes,time_indexes = self.interval_index.intervals_containing(times) File "c:\users\mccormick lab\documents\python\snub\snub\gui\utils\interval.py", line 65, in intervals_containing query_ixs,ref_ixs = self.all_containments_both(self.intervals, query_locations) File "c:\users\mccormick lab\documents\python\snub\snub\gui\utils\interval.py", line 89, in all_containments_both return ncls.all_containments_both(query_locations,query_locations, np.arange(len(query_locations))) File "ncls/src/ncls32.pyx", line 631, in ncls.src.ncls32.NCLS32.all_containments_both cpdef all_containments_both(self, const int32_t [::1] starts, const int32_t [::1] ends, const int64_t [::1] indexes): ValueError: Buffer dtype mismatch, expected 'const int64_t' but got 'long' Traceback (most recent call last): File "c:\users\mccormick lab\documents\python\snub\snub\gui\main.py", line 339, in change_layout_mode current_tab.change_layout_mode(layout_mode) AttributeError: 'NoneType' object has no attribute 'change_layout_mode' Traceback (most recent call last): File "c:\users\mccormick lab\documents\python\snub\snub\gui\main.py", line 362, in open self.load_project(project_dir) File "c:\users\mccormick lab\documents\python\snub\snub\gui\main.py", line 381, in load_project project_tab = ProjectTab(project_directory) File "c:\users\mccormick lab\documents\python\snub\snub\gui\main.py", line 107, in init self.update_current_time(self.current_time) File "c:\users\mccormick lab\documents\python\snub\snub\gui\main.py", line 251, in update_current_time self.panelStack.update_current_time(current_time) File "c:\users\mccormick lab\documents\python\snub\snub\gui\stacks\panel.py", line 52, in update_current_time panel.update_current_time(t) File "c:\users\mccormick lab\documents\python\snub\snub\gui\panels\scatter.py", line 130, in update_current_time nodes,time_indexes = self.interval_index.intervals_containing(times) File "c:\users\mccormick lab\documents\python\snub\snub\gui\utils\interval.py", line 65, in intervals_containing query_ixs,ref_ixs = self.all_containments_both(self.intervals, query_locations) File "c:\users\mccormick lab\documents\python\snub\snub\gui\utils\interval.py", line 89, in all_containments_both return ncls.all_containments_both(query_locations,query_locations, np.arange(len(query_locations))) File "ncls/src/ncls32.pyx", line 631, in ncls.src.ncls32.NCLS32.all_containments_both cpdef all_containments_both(self, const int32_t [::1] starts, const int32_t [::1] ends, const int64_t [::1] indexes): ValueError: Buffer dtype mismatch, expected 'const int64_t' but got 'long'

Thanks,

Evan

[vickerse1]

Python 3.8.13

[calebweinreb]

Thanks for the post! We've previously had some issues with running NCLS on windows. I added a line that should patch this. Can you try running again with the latest commit? If that doesn't work, uninstalling NCLS should get rid of the issue.