Snpclust

[davek44]

Description of your changes

Add option to cluster the SNPs and process the reference sequence one time. I also changed names to better align with their functions and move away from the acronym 'SAD'.

The cloud wrapper will need to be update.

Type of change

• [ ] Bug fix (non-breaking change which fixes an issue)
• [X] New feature (non-breaking change which adds functionality)
• [X] Breaking change (fix or feature that would cause existing functionality to not work as expected)
• [ ] Documentation add / update

[lruizcalico]

Hi Dave, it looks good. Do you want me to get this branch and reformat it so it passes the test? You don't have to do anything on your side.