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calico / scBasset

Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.
Apache License 2.0
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Installing scBasset #3

Closed sanghoonleeeins closed 2 years ago

sanghoonleeeins commented 2 years ago

Hi,

I followed the installation instruction and I think I installed scBasset without any error. But, I couldn't verify that scBasset is correctly installed or not. Please see the error message below. Could you help me with how I can verify its installation? I am using a supercomputer at my university and I have installed some conda packages myself successfully. But, installing a package through 'pip install' is first time. I guess it is because I don't have sudo authority..? But, I didn't get any error message in git clone and "pip install -e scBasset"

(scbasset) [biotech@bridges2-login011 4_scBasset_scATACseq]$ python Python 3.8.6 (default, Dec 17 2020, 16:57:01) [GCC 10.2.0] on linux Type "help", "copyright", "credits" or "license" for more information.

import scbasset Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'scbasset'

Thank you, Sanghoon

hy395 commented 2 years ago

turns out this is a system config issue unrelated to scBasset. I'll close this.