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calico / scnym

Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
https://scnym.research.calicolabs.com
Apache License 2.0
74 stars 11 forks source link

No longer installs #26

Open jlehrer1 opened 1 year ago

jlehrer1 commented 1 year ago

Attempting to install yields the error 

  error: subprocess-exited-with-error

  × Preparing metadata (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [1 lines of output]
      error in leidenalg setup command: use_2to3 is invalid.
      [end of output]

  note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed

× Encountered error while generating package metadata.
╰─> See above for output.

Downgrading setuptools via https://github.com/liftoff/pyminifier/issues/132 doesn't seem to help.

hy395 commented 9 months ago

Hi @jlehrer1 , sorry for the delayed response. I made some updates to the dependency version requirements. If you still wanna try out scnym, could you follow the installation instructions and try installing again from github (by pip install -e scnym/) rather than PyPI?