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calico
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scnym
Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
https://scnym.research.calicolabs.com
Apache License 2.0
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Multi-domain training, integrated gradients and API updates
#9
Closed
jacobkimmel
closed
3 years ago
jacobkimmel
commented
3 years ago
Adds multi-domain training support with a new
scnym_api
argument:
domain_groupby
Replaces raw gradient magnitude-based saliency methods with integrated gradients
Adds implementations of baseline models benchmarked in the
scNym
manuscript
Adds hyperparameter tuning through reverse cross-validation
Updates
README
to highlight multi-domain training
Removes pre-trained models to avoid improper use
Updates tests
scnym_api
argument:domain_groupby
scNym
manuscriptREADME
to highlight multi-domain training