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calico / solo

software to detect doublets
MIT License
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2c.h5ad doesn't contain gene names #59

Closed brianpenghe closed 3 years ago

brianpenghe commented 3 years ago

I was trying to use the h5ad data files collected by the paper. However, that 2c.h5ad doesn't contain gene names - nor does it contain cell type labels. Is there any chance you can provide complete h5ad data files you used for doublet detection demonstration?

Thanks!

njbernstein commented 3 years ago

@brianpenghe You don't need cell types or gene names to detect doublets, so I just converted the matrix file to an h5ad for my purposes. If you need that information I'd use the files from GEO. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE96583