I have a question about ARACNe: I use the commands in the folder /data/ to generate ARACNe networks and they work nicely on a HPC.
Now I would need to save the full ARACNe ranking instead that only the significant interactions. To this end, in the file aracne-script.sh, I set P_THRESH=1.0 and passed "bonferroni 1.0" to aracne_consolidate.R, but I still get only the significant interactions.
Hello, thanks for the amazing package.
I have a question about ARACNe: I use the commands in the folder /data/ to generate ARACNe networks and they work nicely on a HPC.
Now I would need to save the full ARACNe ranking instead that only the significant interactions. To this end, in the file aracne-script.sh, I set P_THRESH=1.0 and passed "bonferroni 1.0" to aracne_consolidate.R, but I still get only the significant interactions.
How can I obtain the full ARACNe rankings?
Thank you, Best wishes Jonathan