I am facing the following error: Data prep...Error: $ operator is invalid for atomic vectors when I run meta_narnea or PISCESActivity. Could you please help me to solve this issue?
My Seurat object is an integrated processed (filtering, clustering, etc) data.
I generated ARACNe3_Final_Network_List by following NaRnEA Manuscript - Head and Neck Squamous Cell Carcinoma vignette, except I didn't separate the gene expression profile into two conditions, but I used intact expression matrix as the input.
WARNING: Running meta_narnea with sample.weights = TRUE may be very slow for large number of samples.
Data prep...Error: $ operator is invalid for atomic vectors
Hi,
Thank you for developing this wonderful tool!
I am facing the following error: Data prep...Error: $ operator is invalid for atomic vectors when I run
meta_narnea
orPISCESActivity
. Could you please help me to solve this issue?Also, I have a question about vignettes/pisces_pbmc.Rmd. What is "narnea.res" in Line 102? Is this output of
meta_narnea
?Further information is below:
Data prep...Error: $ operator is invalid for atomic vectors
or
WARNING: Running
meta_narnea
with sample.weights = TRUE may be very slow for large number of samples. Data prep...Error: $ operator is invalid for atomic vectorsPackage versions
Any suggestions would be appreciated!