New cell lines from DepMap 23q2 release

[mjsteinbaugh]

Hi Cellosaurus team,

I noticed that there are 5 cell lines now available at DepMap that are not currently annotated in Cellosaurus. Can we work on adding them?

DepMap ID Name Source
ACH-001134 MYLA Academic lab
ACH-001172 U251MGDM HSRRB via Bandhyopadhyay (Broad)
ACH-002002 A375SKINCJ2 Cory Johannessen (Broad)
ACH-002471 PSS008 Alejandro Sweet-Cordero (UCSF)
ACH-002834 PSS131R Alejandro Sweet-Cordero (UCSF)

Best, Mike

[AmosBairoch]

Hi Mike

Here is the situation regarding these 5 DepMap cell line entries:

1) Myla

There are 11 different Myla cell lines, so here there is not enough information to know which one it is.

2)|U251MGDM HSRRB

Currently I have not obtained from DepMap any information on how this cell line is derived from U251MG. So until this is obtained there is no way I can create that entry.

|3) This was prepared for the next release and will be CVCL_C8YB

4) and 5)

A few weeks ago I received from|Alejandro Sweet-Cordero, the correspondance between is published "OS" series of cell lines and the old "PSS" designations.

So:

PSS008=OS052 and is CVCL_C8FR PSS131R=OS384 and is CVCL_C8FU

Best Amos

| On 22.08.2023 18:48, Michael Steinbaugh wrote:

Hi Cellosaurus team,

I noticed that there are 5 cell lines now available at DepMap that are not currently annotated in Cellosaurus. Can we work on adding them?

|DepMap ID Name Source ACH-001134 MYLA Academic lab ACH-001172 U251MGDM HSRRB via Bandhyopadhyay (Broad) ACH-002002 A375SKINCJ2 Cory Johannessen (Broad) ACH-002471 PSS008 Alejandro Sweet-Cordero (UCSF) ACH-002834 PSS131R Alejandro Sweet-Cordero (UCSF) |

Best, Mike

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Hi Mike

Here is the situation regarding these 5 DepMap cell line entries:

1) Myla

There are 11 different Myla cell lines, so here there is not enough information to know which one it is.

2) U251MGDM HSRRB

Currently I have not obtained from DepMap any information on how this cell line is derived from U251MG. So until this is obtained there is no way I can create that entry.

3) This was prepared for the next release and will be CVCL_C8YB

4) and 5)

A few weeks ago I received from Alejandro Sweet-Cordero, the correspondance between is published "OS" series of cell lines and the old "PSS" designations.

So:

PSS008=OS052 and is CVCL_C8FR
PSS131R=OS384 and is CVCL_C8FU

Best
Amos



On 22.08.2023 18:48, Michael Steinbaugh wrote:

Hi Cellosaurus team,

I noticed that there are 5 cell lines now available at DepMap that are not currently annotated in Cellosaurus. Can we work on adding them?

DepMap ID Name Source
ACH-001134 MYLA Academic lab
ACH-001172 U251MGDM HSRRB via Bandhyopadhyay (Broad)
ACH-002002 A375SKINCJ2 Cory Johannessen (Broad)
ACH-002471 PSS008 Alejandro Sweet-Cordero (UCSF)
ACH-002834 PSS131R Alejandro Sweet-Cordero (UCSF)

Best,
Mike

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Professor at the Faculty of Medicine of the University of Geneva
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@AmosBairoch Fantastic, thanks for the update. I'll see if I can provide more useful information on Myla and U251MGDM.

[mjsteinbaugh]

@AmosBairoch Will do some additional digging regarding MYLA but I think this is safe to close for now