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callahantiff / OMOP2OBO

OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
http://tiffanycallahan.com/OMOP2OBO_Dashboard
MIT License
80 stars 12 forks source link

Bump nltk from 3.6.5 to 3.6.6 #79

Closed dependabot[bot] closed 1 year ago

dependabot[bot] commented 1 year ago

Bumps nltk from 3.6.5 to 3.6.6.

Changelog

Sourced from nltk's changelog.

Version 3.7 2022-02-09

  • Improve and update the NLTK team page on nltk.org (#2855, #2941)
  • Drop support for Python 3.6, support Python 3.10 (#2920)

Version 3.6.7 2021-12-28

  • Resolve IndexError in sent_tokenize and word_tokenize (#2922)

Version 3.6.6 2021-12-21

  • Refactor gensim.doctest to work for gensim 4.0.0 and up (#2914)
  • Add Precision, Recall, F-measure, Confusion Matrix to Taggers (#2862)
  • Added warnings if .zip files exist without any corresponding .csv files. (#2908)
  • Fix FileNotFoundError when the download_dir is a non-existing nested folder (#2910)
  • Rename omw to omw-1.4 (#2907)
  • Resolve ReDoS opportunity by fixing incorrectly specified regex (#2906)
  • Support OMW 1.4 (#2899)
  • Deprecate Tree get and set node methods (#2900)
  • Fix broken inaugural test case (#2903)
  • Use Multilingual Wordnet Data from OMW with newer Wordnet versions (#2889)
  • Keep NLTKs "tokenize" module working with pathlib (#2896)
  • Make prettyprinter to be more readable (#2893)
  • Update links to the nltk book (#2895)
  • Add CITATION.cff to nltk (#2880)
  • Resolve serious ReDoS in PunktSentenceTokenizer (#2869)
  • Delete old CI config files (#2881)
  • Improve Tokenize documentation + add TokenizerI as superclass for TweetTokenizer (#2878)
  • Fix expected value for BLEU score doctest after changes from #2572
  • Add multi Bleu functionality and tests (#2793)
  • Deprecate 'return_str' parameter in NLTKWordTokenizer and TreebankWordTokenizer (#2883)
  • Allow empty string in CFG's + more (#2888)
  • Partition tree.py module into tree package + pickle fix (#2863)
  • Fix several TreebankWordTokenizer and NLTKWordTokenizer bugs (#2877)
  • Rewind Wordnet data file after each lookup (#2868)
  • Correct init call for SyntaxCorpusReader subclasses (#2872)
  • Documentation fixes (#2873)
  • Fix levenstein distance for duplicated letters (#2849)
  • Support alternative Wordnet versions (#2860)
  • Remove hundreds of formatting warnings for nltk.org (#2859)
  • Modernize nltk.org/howto pages (#2856)
  • Fix Bleu Score smoothing function from taking log(0) (#2839)
  • Update third party tools to newer versions and removing MaltParser fixed version (#2832)
  • Fix TypeError: _pretty() takes 1 positional argument but 2 were given in sem/drt.py (#2854)
  • Replace http with https in most URLs (#2852)

Thanks to the following contributors to 3.6.6 Adam Hawley, BatMrE, Danny Sepler, Eric Kafe, Gavish Poddar, Panagiotis Simakis, RnDevelover, Robby Horvath, Tom Aarsen, Yuta Nakamura, Mohaned Mashaly

... (truncated)

Commits
  • 4862b09 updates for 3.6.6
  • 6b60213 Refactor gensim.doctest to work for gensim 4.0.0 and up (#2914)
  • 59aa3fb Fix decode error for bllip parser (#2897)
  • a28d256 Add Precision, Recall, F-measure, Confusion Matrix to Taggers (#2862)
  • 72d9885 Added warnings if .zip files exist without any corresponding .csv files. (#2908)
  • dea7b44 Fix FileNotFoundError when the download_dir is a non-existing nested fold...
  • abbe86b Undo #2909 due to unexpected test failure
  • c075dab Allow commits with /nocache to not use the cache (#2909)
  • d6d513d Renamed omw to omw-1.4 (#2907)
  • 2a50a3e Resolve ReDoS opportunity by fixing incorrectly specified regex (#2906)
  • Additional commits viewable in compare view


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dependabot[bot] commented 1 year ago

OK, I won't notify you again about this release, but will get in touch when a new version is available. If you'd rather skip all updates until the next major or minor version, let me know by commenting @dependabot ignore this major version or @dependabot ignore this minor version.

If you change your mind, just re-open this PR and I'll resolve any conflicts on it.