π DO NOT USE THIS BRANCH OR MODIFY THIS PR -- CONTENT IS KEPT FOR NOTES π
Purpose
This PR addresses several issues and overhauls many aspects of the current build, which is described in more detail below. The primary changes made impact the amount, type, and storage of metadata at both the node- and triple-level.
Issues Addressed by PR
97
99
107
114
Scripts Impacted
owlnets.py.
Updated to fix the prior bad assumption about classes and axioms built using UnionOf constructors
metadata.py
Get new functionality for processing Biolink types
edge_list.py
Get new functionality for adding Bioregistry identifiers
utils/data_utils.py
functions created to facilitated with API-access to BioLink and Bioregistry
Data Sources/Documentation Impacted
edge_source_list.txt
Added back chemical-rna edge data
resource_info.txt
Updated metadata for many of the edges, most often in an effort to soften the initial formatting that was applied to the data (i.e., having a more liberal and inclusive build, but providing the user with the ability to enforce specific filtering choices)
added back information for the chemical-rna edge
Notebooks Impacted
OWLNETS_Example_Application.ipynb
Data_Preparation.ipynb
Output Impacted
All output files will be g-zipped in order to improve resource use
π DO NOT USE THIS BRANCH OR MODIFY THIS PR -- CONTENT IS KEPT FOR NOTES π
Purpose
This PR addresses several issues and overhauls many aspects of the current build, which is described in more detail below. The primary changes made impact the amount, type, and storage of metadata at both the node- and triple-level.
Issues Addressed by PR
97
99
107
114
Scripts Impacted
owlnets.py
.UnionOf
constructorsmetadata.py
edge_list.py
utils/data_utils.py
Data Sources/Documentation Impacted
edge_source_list.txt
chemical-rna
edge dataresource_info.txt
chemical-rna
edgeNotebooks Impacted
OWLNETS_Example_Application.ipynb
Data_Preparation.ipynb
Output Impacted
Other Updates
v2-Data-Sources
KG Construction
OWL-NETS 2.0