callahantiff / PheKnowLator

PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
https://github.com/callahantiff/PheKnowLator/wiki
Apache License 2.0
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Wiki: Update v2.0.0 data source hyperlinks #52

Closed callahantiff closed 3 years ago

callahantiff commented 4 years ago

Task: Make sure that all data source links are updated on the Wiki and throughout repo for current build.

callahantiff commented 4 years ago

Update: Upload all data referenced in Wiki and used in current build to Zenodo and associate it with the the GitHub release.

callahantiff commented 4 years ago

Make sure that links are also updated in each releases Jupyter Notebooks:

callahantiff commented 4 years ago

Also, replace dropbox links with links to zenodo used when downloading the data sources:

callahantiff commented 3 years ago

TASK

Task Type: PKT DATA DELIVERY

Use Google Cloud Storage (GCS) bucket with dated subdirectories to store data and output for each build. This would let us have automatic updated build information and provide the following things:

TODO

callahantiff commented 3 years ago

Container Storage
Docker container for each KG build type (does not contain the source data -- this is retrieved from the GCS bucket) stored on DockerHub or Google's Container registry

callahantiff commented 3 years ago

Done! All wiki pages have had DropBox links removed and now point the GCS buckets.