Add Baseline KG Embeddings To CI/CD

callahantiff / PheKnowLator

PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models

https://github.com/callahantiff/PheKnowLator/wiki

Apache License 2.0

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Add Baseline KG Embeddings To CI/CD #71

Closed callahantiff closed 3 years ago

callahantiff commented 3 years ago

TASK

Task Type: CODEBASE

Create code that generates a single set of baseline embeddings for each KG build output by PheKnowLator. This code should be run as part of the CD/CI

TODO

[ ] Choose an embedding method
- CSR + Node2Vec
- Embiggen
[ ] Select reasonable hyperparameter settings for each OWL and OWL-NETS build
[ ] Incorporate build into CI/CD workflow (#68)

callahantiff commented 3 years ago

Holding off on adding embeddings until evaluation complete. This will allow us to select the most appropriate kinds of embeddings to incorporate into the monthly builds. Closing for now. Will open new issue after paper is submitted.