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cambiotraining
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bacterial-genomics
Course materials for "Working with Bacterial Genomes"
https://cambiotraining.github.io/bacterial-genomics/
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add worked examples start-to-finish
#27
tavareshugo
opened
4 months ago
0
incorporate ONT analysis
#26
tavareshugo
opened
4 months ago
0
vibrio case study
#25
tavareshugo
opened
6 months ago
3
Ideas for expanding materials
#24
tavareshugo
opened
6 months ago
3
session timings - Dec 2023 workshop
#23
tavareshugo
opened
6 months ago
4
Nextflow config image - typo
#22
tavareshugo
closed
6 months ago
0
Update link in section 4 of the material
#21
bsalehe
opened
7 months ago
0
Commands for testing software setup
#20
tavareshugo
closed
7 months ago
1
add `--max_memory` and `--max_cpus` throughout the solutions
#19
tavareshugo
closed
7 months ago
0
update dropbox link to data
#18
tavareshugo
closed
7 months ago
0
Script name in S_pneumoniae exercise is wrong
#17
tavareshugo
closed
7 months ago
0
Modify pseudogenome_check.sh scripts to avoid error when re-running
#16
bsalehe
closed
7 months ago
15
Install pandas in base environment
#15
bsalehe
closed
7 months ago
3
Adding -resume for each nextflow script
#14
bsalehe
closed
7 months ago
1
ModuleNotFoundError: No module named 'pandas' - when running "merge_tb_data.py"
#13
bsalehe
closed
7 months ago
4
Add instructions to install R
#12
tavareshugo
closed
7 months ago
0
modify database directory in course files
#11
tavareshugo
closed
7 months ago
0
IQ-Tree error when running 04-mask_pseudogenome.sh
#10
bsalehe
closed
7 months ago
10
Add indication of which conda environment is required in scripts
#9
tavareshugo
closed
7 months ago
1
Script edit
#8
avantonder
closed
7 months ago
3
Pipeline & data tests
#7
tavareshugo
opened
7 months ago
1
seqtk_parser.py error
#6
tavareshugo
closed
7 months ago
1
Where does 'samples_to_keep.txt' used as input in `04-mask_pseudogenome.sh` come from?
#5
tavareshugo
closed
7 months ago
10
Renaming `fas` files in 02-pseudogenome_check.sh
#4
tavareshugo
closed
7 months ago
4
collapse book parts
#3
tavareshugo
closed
7 months ago
1
Software requirements
#2
tavareshugo
closed
7 months ago
6
Course development ideas
#1
tavareshugo
opened
1 year ago
0