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cambiotraining / bioinformatics-software-pipelines

Course materials for "Managing Bioinformatics Software and Pipelines"
https://cambiotraining.github.io/bioinformatics-software-pipelines/
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Slow mamba install #11

Open adamjamesreid opened 2 weeks ago

adamjamesreid commented 2 weeks ago

mamba install -n phylo iqtree==2.3.3 mafft==7.525

Took a pretty long time to install, may be we could find a less realistic example :-p

adamjamesreid commented 2 weeks ago

This one also:

mamba create -n metagen multiqc bowtie2 metaphlan

tavareshugo commented 2 weeks ago

On the actual course we can cache the packages, so when people do it, it hopefully goes quickly.

For example, if you now do: mamba create -n metagen2 multiqc bowtie2 metaphlan it shouldn't take as long (I hope), since the packages will already be present in your first environment.