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cambiotraining / bioinformatics-software-pipelines

Course materials for "Managing Bioinformatics Software and Pipelines"
https://cambiotraining.github.io/bioinformatics-software-pipelines/
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`viralrecon` throws errors with provided files #18

Closed tavareshugo closed 1 week ago

tavareshugo commented 3 months ago

Using --fasta and --primer_bed seems to not be working.

tavareshugo commented 3 months ago

This might only be an issue with ONT workflow - could consider removing it, as it actually is a complicated command involving medaka and its models.