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cambiotraining / bioinformatics-software-pipelines

Course materials for "Managing Bioinformatics Software and Pipelines"
https://cambiotraining.github.io/bioinformatics-software-pipelines/
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install nextflow with conda #5

Open tavareshugo opened 2 months ago

tavareshugo commented 2 months ago

On the HPC the default nextflow recipe fails with the latest java allowed (version 21). Instead, I had to force lower version of openjdk:

name: nextflow
channels: 
  - conda-forge
  - bioconda
dependencies:
  - nextflow==23.10.1
  - openjdk==17.0.11

Might be worth adding a note somewhere about this