Proposed changes - Githubissues

cambiotraining / chipseq

ChIP-seq and ATAC-seq analysis

https://cambiotraining.github.io/chipseq/

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Open scortijo opened 5 years ago

scortijo commented 5 years ago

Move length and quality trimming in bonus exercises in QC practical to gain a bit of time (day 1 morning)
Move ChIP-seq lecture in the morning of day 1
This will give more time to go explain a bit more the codes when going through the solution of the ChIP-seq practical
Replace SeqPlots by DeepTools in ATAC-seq practical
Use data from the same species throughout the practical to be able to show TF, chromatin and ATAC-seq together in IGV at the end of day 2

scortijo commented 5 years ago

Another good idea from the student's feedbacks:

Maybe a small note about how to install the tools we have used on my own workstation - what will I need in terms of operating environment, anything extra, etc.