Open tavareshugo opened 8 months ago
Keeping this issue as a way to track the setup needed on our virtual (AWS) HPC.
System installation:
singularity
/etc/singularity/singularity.conf
eog
R
install.packages('argparse')
Install as modules:
bowtie
bowtie2
module avail
numpy
matplotlib
Install as mamba environments:
mamba create -n scipy scipy==1.12.0 numpy==1.26.4 matplotlib==3.8.3
mamba create -n mapping bowtie2==2.5.3
This should cache these packages, which are then installed during the course demonstration.
Keeping this issue as a way to track the setup needed on our virtual (AWS) HPC.
System installation:
singularity-> need to configure it so it sees the entire filesystem by default (need to add binds to/etc/singularity/singularity.conf)eog(image viewer)R(latest version is fine) andinstall.packages('argparse')Install as modules:
bowtie1.3.1bowtie22.4.0 and 2.5.3 --> so when we domodule availwe see both versions.numpy1.26.4matplotlib3.8.3Install as mamba environments:
mamba create -n scipy scipy==1.12.0 numpy==1.26.4 matplotlib==3.8.3mamba create -n mapping bowtie2==2.5.3This should cache these packages, which are then installed during the course demonstration.