The integrated R object _Complete_integrationobj.rds that is loaded into the script has already integrated RNA and ADT assays. If we were to run the codes from L37-L61, we are repeating the integration. Do you reckon this is necessary? I think we should skip it. Please let me know. Thank you.
https://github.com/cameliaquek/singlecellmel/blob/8a9661f32f0cbe9573a5b2dd433df251473e6005/scripts/STEP0-CITEseq.Rmd#L37-L61
The integrated R object _Complete_integrationobj.rds that is loaded into the script has already integrated RNA and ADT assays. If we were to run the codes from L37-L61, we are repeating the integration. Do you reckon this is necessary? I think we should skip it. Please let me know. Thank you.