Open ryneches opened 8 years ago
@ryneches Some papers of interest:
Also, it turns out that transposons play a major part in egg spot evolution : http://www.nature.com/ncomms/2014/141009/ncomms6149/full/ncomms6149.html
Also: RepeatMasker
Reference-Free Population Genomics from Next-Generation Transcriptome Data and the VertebrateāInvertebrate Gap : http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1003457
High abundance kmers align to a Haplochromine instance of a fugu LINE element sequence (GBID AB601475.1). Use relative kmer counts of the LINE element verses the rest of the genome to estimate dosage of this retrotransposon. Compare to other cichlid raw data.