camlab-bioml / cytomarker

Interactive design and validation of antibody panels using single-cell atlases
https://camlab.shinyapps.io/cytomarker/
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Not all genes display on correlation-correlation heatmap #103

Closed kieranrcampbell closed 1 year ago

kieranrcampbell commented 1 year ago

It seems only every other gene is displayed in the gene-gene correlation heatmap:

Screen Shot 2023-01-06 at 12 56 23 PM

I'm on a pretty big monitor with browser taking up full screen, so don't think it's a small screen issue. Is there a way to fix?

matt-sd-watson commented 1 year ago

this can be changed easily but the result for large panels is label overlap:

heatmap_overlap

Should we try to 1. auto-detect overlaps when they happen, or try to make the dimensions bigger based on the number of genes present?

kieranrcampbell commented 1 year ago

I think a possible (unintended) consequence of us doing this is the axis labels overlap if the panel size is large (see attached screenshot below, ditto for correlation heatmaps)

Is it possible to reduce the axis label size when the panel is large so all gene names are visible?

Screen Shot 2023-03-07 at 3 42 54 PM