Change p-value type to "all" instead of "any" in scran findMarkers to ensure more conservative marker finding and specificity for cell types (should have been the default from the beginning). Resolves #105
Add cicerone help guide on the start page for an interactive help tour of the steps required to step up analysis
Add gene aliases when uploading lists of custom markers. cytosel will search using the org.Hs.eg.db library to match gene symbols to Entrez IDs and evaluate if any gene aliases exist in the dataset
Toggle different hovertip for marker selection depending on the configuration (whether or not the star reflects an Abcam target or the original panel recommendations)
Expand screenshot testing to include cicerone
include parked code for subsetting the Tabula Sapiens datasets based on UMAP coordinates (possible to have subsetting start at the centroid of each cluster to subset more similar cells). Not currently implemented
Summary of proposed changes:
findMarkersto ensure more conservative marker finding and specificity for cell types (should have been the default from the beginning). Resolves #105org.Hs.eg.dblibrary to match gene symbols to Entrez IDs and evaluate if any gene aliases exist in the dataset