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camlab-bioml / starling

Segmentation error aware clustering for multiplexed imaging
https://camlab-bioml.github.io/starling/
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k still required even when cluster initialization is "User" #43

Closed kieranrcampbell closed 2 months ago

kieranrcampbell commented 3 months ago

Running utility.init_clustering with "User" specified

e.g.

adatast = utility.init_clustering("User", adata_all, labels=adata_all.obs.leiden)

throws error

TypeError: init_clustering() missing 1 required positional argument: 'k'

despite the fact k should not be required when user clustering is specified.

cklamann commented 2 months ago

closed with #45.