issues
search
campanam
/
RatesTools
Pipeline to calculate de novo mutation rates from parent-offspring trios
Creative Commons Zero v1.0 Universal
5
stars
1
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Update CHANGELOG.Md
#83
campanam
closed
1 month ago
0
V1.2.1 dev
#82
campanam
closed
4 months ago
0
[BUG] Region filter bypass keeps files bgzipped, preventing ruby reading properly
#81
campanam
closed
4 months ago
1
Update README.md
#80
campanam
closed
6 months ago
0
[FEATURE REQUEST] Specify prefix for candidates in output 16
#79
campanam
opened
6 months ago
0
[FEATURE REQUEST] Skip splitTrio when only one offspring
#78
campanam
opened
6 months ago
1
Update ruby_r_scripts.md
#77
campanam
closed
6 months ago
0
V1.2.0 dev
#76
campanam
closed
6 months ago
0
[BUG] Double-forward cites get doubled somewhere
#75
campanam
closed
6 months ago
1
[FEATURE REQUEST] Mutational spectrum and candidates VCF AFTER clump and sibling filtering
#74
campanam
closed
6 months ago
2
[BUG] Candidate DNM VCF missing header
#73
campanam
closed
6 months ago
2
[BUG] minAF filter interaction with dnm_summary_stats
#72
campanam
closed
6 months ago
1
[FEATURE REQUEST] Incorporate binomial confidence intervals into pipeline
#71
campanam
closed
6 months ago
2
[FEATURE REQUEST] Estimate non-normal bootstrap confidence interval
#70
campanam
opened
6 months ago
2
[BUG] Adjusted confidence interval uses adjusted bootstrap mean rather than adjusted standard deviation
#69
campanam
closed
7 months ago
1
Posthoc clump
#68
campanam
closed
7 months ago
0
[FEATURE REQUEST] Infer bootstrap number from dnm_opts line
#67
campanam
closed
6 months ago
1
[FEATURE REQUEST] Entry points from existing VCF
#66
campanam
opened
10 months ago
0
Merge v. 1.1.0 changes
#65
campanam
closed
10 months ago
0
Update docs
#64
campanam
closed
11 months ago
0
Update CHANGELOG.Md
#63
campanam
closed
11 months ago
0
Dsl2
#62
campanam
closed
11 months ago
0
[FEATURE REQUEST] Update to Nextflow DSL2
#61
campanam
closed
11 months ago
1
V0.5.11 development
#60
campanam
closed
1 year ago
0
V0.5.10 development
#59
campanam
closed
1 year ago
0
[FEATURE REQUEST] Options lines for RepeatMasker/RepeatModeler
#58
campanam
closed
11 months ago
1
Selfing test
#57
campanam
closed
1 year ago
0
Ratestools conda
#56
campanam
closed
2 years ago
0
Rates tools revions
#55
campanam
closed
2 years ago
0
[BUG] $baseDir rather than $launchDir
#54
campanam
closed
2 years ago
1
[FEATURE REQUEST] FNR estimation
#53
campanam
opened
2 years ago
0
Empty region bed
#52
campanam
closed
2 years ago
0
[FEATURE REQUEST] option to turn off region filter
#51
campanam
closed
11 months ago
3
Vcf output for baits tools
#50
campanam
closed
2 years ago
0
truncated bedtools fix
#49
campanam
closed
2 years ago
1
[BUG] gatksitefilt dumped into regionfilt output
#48
campanam
closed
2 years ago
1
V0.5.3
#47
campanam
closed
2 years ago
0
Makefile Improvements
#46
campanam
closed
2 years ago
0
[FEATURE REQUEST] BaitsTools process/primer process
#45
campanam
opened
2 years ago
0
[BUG] makefile only works for Linux/older macOS
#44
campanam
closed
2 years ago
1
Min ad1+min af
#43
campanam
closed
2 years ago
0
[FEATURE REQUEST] minAD1 + minAF combined behaviour
#42
campanam
closed
2 years ago
1
V.0.5.2 development
#41
campanam
closed
2 years ago
0
[BUG] logstats.sh improvements and separate as a channel
#40
campanam
closed
2 years ago
1
Closures
#39
campanam
closed
2 years ago
0
V0.5.1 logstats
#38
campanam
closed
2 years ago
0
V0.5.0 development
#37
campanam
closed
2 years ago
0
Add optional email output and flagging of workflow completion/error
#36
campanam
closed
2 years ago
1
Add indel padding parameter to nextflow.config, configure.sh and indel process
#35
campanam
closed
2 years ago
1
V0.5.0 sitelogging
#34
campanam
closed
2 years ago
0
Next