I know that the mappings are there, because they're in the CCDH Model:
BodySite:
name: BodySite
description: A site in the body of an organism, typically described in terms of
an anatomical location and optional qualifiers (e.g. left/right, upper/lower).
But body sites as defined here may include 'non-anatomic' sites, such as the
location of an implanted medical device.
notes:
- Derived from [BodySite in sheet BodySite](https://docs.google.com/spreadsheets/d/1oWS7cao-fgz2MKWtyr8h2dEL9unX__0bJrWKv6mQmM4/edit#gid=1097478901)
is_a: Entity
attributes:
site:
name: site
exact_mappings: # <----------------------------------
- GDC:Sample.biospecimen_anatomic_site
- PDC:Sample.biospecimen_anatomic_site
- ICDC:Sample.sample_site
- HTAN:Biospecimen.SiteofResectionorBiopsy
- GDC:Case.primary_site
- PDC:Case.primary_site
- GDC:Project.primary_site
- GDC:Treatment.treatment_anatomic_site
- PDC:Treatment.treatment_anatomic_site
- GDC:Diagnosis.site_of_resection_or_biopsy
- PDC:Diagnosis.site_of_resection_or_biopsy
description: A term describing any site in the body.
notes:
- 'Cardinality: 1..1'
examples:
- value: Adenoid
- value: Adipose
- value: Adrenal
values_from: crdch:enum_CRDCH_BodySite_site
domain: BodySite
range: CodeableConcept
multivalued: false
required: true
Additional information
There are some CRDC-H fields which are showing mappings. For example:
source_material_type:
name: source_material_type
exact_mappings:
- GDC:Sample.sample_type
- GDC:Sample.sample_type_id
- PDC:Sample.sample_type
- PDC:Sample.sample_type_id
- ICDC:Sample.physical_sample_type
- HTAN:Biospecimen.BiospecimenType
description: The general kind of material from which the specimen was derived.
notes:
- 'Cardinality: 0..1'
comments:
- Values captured here may describe the type of molecular mixture, cell, tissue,
organ, body fluid, embryo, excretory substance, or experimental system from
which a specimen was derived.
examples:
- value: Tissue
- value: Blood
- value: Tumor Aspirate
- value: Cell Line
- value: Expanded Next Generation Cancer Model
- value: Pleural Effusion
- value: Xenograft Tissue
values_from: crdch:enum_CRDCH_Specimen_source_material_type
domain: Specimen
range: CodeableConcept
multivalued: false
required: false
Why does mapping info show up for CRDC-H.Specimen.source_material_type but not CRDC-H.BodySite.site?
Description
https://terminology.ccdh.io/models/CRDC-H/entities/BodySite/attributes/site/mappings yields
"mappings":[]
I know that the mappings are there, because they're in the CCDH Model:
Additional information
There are some CRDC-H fields which are showing mappings. For example:
https://terminology.ccdh.io/models/CRDC-H/entities/Specimen/attributes/source_material_type/mappings
Why does mapping info show up for
CRDC-H.Specimen.source_material_type
but notCRDC-H.BodySite.site
?