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cancerDHC / example-data

This repository is intended to act as a store of example data files from across the NCI Cancer Research Data Commons (CRDC) nodes in a number of formats.
MIT License
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import ccdhmodel from PyPI, not from filesystem #20

Closed turbomam closed 2 years ago

turbomam commented 2 years ago

https://pypi.org/project/crdch-model/

gaurav commented 2 years ago

Wow, I'm surprised there wasn't an issue for this already! Thanks for making it, Mark!

turbomam commented 2 years ago

I didn't look super diligently

turbomam commented 2 years ago

use branch issue-20-pypi-model

turbomam commented 2 years ago 
% find . -name '*ipynb'
./head-and-mouth/Head and Mouth Cancer Datasets.ipynb
./GDC to CCDH conversion.ipynb
./cptac2-subject-09CO022/CDA example for subject 09CO022.ipynb
./.ipynb_checkpoints/GDC to CCDH conversion-checkpoint.ipynb
turbomam commented 2 years ago

Without pushing any changes (just making a branch?), GH Action Merge pull request #14 from cancerDHC/fix-jupyter-notebook -> build (3.6) failed because of

[pipenv.exceptions.InstallError]: ERROR: Could not find a version that satisfies the requirement rdflib-jsonld==0.5.0 (from versions: 0.2, 0.3, 0.4.0, 0.5.0, 0.6.0, 0.6.1, 0.6.2) [pipenv.exceptions.InstallError]: ERROR: No matching distribution found for rdflib-jsonld==0.5.0 ERROR: Couldn't install package: rdflib-jsonld

I think people have been discussing this problem on some other LinkML related repos