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cancerDHC / example-data

This repository is intended to act as a store of example data files from across the NCI Cancer Research Data Commons (CRDC) nodes in a number of formats.
MIT License
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Figure out how to add demographic information to GDC head-and-mouth data #24

Closed gaurav closed 2 years ago

gaurav commented 2 years ago

The GDC import doesn't include demographic information. We should modify the import at https://github.com/cancerDHC/example-data/blob/main/head-and-mouth/Head%20and%20Mouth%20Cancer%20Datasets.ipynb to include this information.

Related to #6.

gaurav commented 2 years ago

I have a suspicion that this might be as easy as modifying "expand": "diagnoses,samples" to "expand": "diagnoses,samples,demographic", but it probably isn't that easy :)

jooho-lee-kim commented 2 years ago

It was easy like that. Do we want to update gdc-head-and-mouth.json file to include demographic portion of data?

gaurav commented 2 years ago

Yes, please!