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cancerDHC / example-data

This repository is intended to act as a store of example data files from across the NCI Cancer Research Data Commons (CRDC) nodes in a number of formats.
MIT License
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Started updating GDC to CCDH conversion to use crdch_model #26

Closed gaurav closed 2 years ago

gaurav commented 2 years ago

This PR starts the process of updating the GDC to CCDH conversion Jupyter Notebook to use crdch_model rather than the using the ccdh/ccdhmodel.py file included in this repo. Since there have been some major changes to the model since that release, this will require the code to be updated as well.

WIP: Apart from fully converting this Jupyter Notebook, this PR should try to create a GitHub Action (#18) to ensure that all included Jupyter Notebooks are executable without any errors.

Closes #25.

gaurav commented 2 years ago

@sujaypatil96 This is the work I previously did on converting the GDC-to-CRDCH Jupyter Notebook to use the crdch_model from PyPI, but I didn't manage to fully finish it. I think I'll wait until you're done with the PDC-to-CRDCH Jupyter Notebook, and then I'll steal some ideas from you from that project :)

gaurav commented 2 years ago

These changes have already been made in PR #48, closing.