Uncomment non-validating data from the CCDH Pilot examples and fix CRDCH model so that they work correctly - Githubissues

cancerDHC / example-data

This repository is intended to act as a store of example data files from across the NCI Cancer Research Data Commons (CRDC) nodes in a number of formats.

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Uncomment non-validating data from the CCDH Pilot examples and fix CRDCH model so that they work correctly #39

Open gaurav opened 2 years ago

gaurav commented 2 years ago

Currently non-validating data includes:

In ccdh-pilot/demonstrator-1:
- [ ] Field identifier can't be validated correctly.
- [ ] Field quantity_measure can't be validated correctly.
- [ ] Field execution_time_observation can't be validated correctly.
- [ ] Field primary_site can't be validated correctly.
- [ ] Field observations can't be validated correctly.
- [ ] Field stage can't be validated correctly.
In ccdh-pilot/demonstrator-2:
- [ ] Field identifiers can't be validated correctly.
- [ ] Field part_of can't be validated correctly.
- [ ] Field associated_subject can't be validated correctly.
- [ ] Field member_of_research_project can't be validated correctly.
- [ ] Field primary_site can't be validated correctly.
- [ ] Field observations can't be validated correctly.
- [ ] Field diagnosis_date.date_time requires a complete date, not just a year. (see https://github.com/cancerDHC/ccdhmodel/issues/130)

TODO: once PR #22 has been merged, this issue should be updated with links to the offending pieces of data.

gaurav commented 2 years ago

This appears to be caused by the bug identified in https://github.com/linkml/linkml/issues/463.