Closed jooho-lee-kim closed 2 years ago
Some data fields are updated on PDC data.
The changes I've noticed in the downloaded PDC file (JSON format) are:
"days_to_birth": -22269
-> "days_to_birth": "-22268"
). "days_to_last_follow_up": "145"
-> "days_to_last_follow_up": "145.00"
)"is_ffpe": "0"
-> "is_ffpe": "FALSE"
)demographic_id
and diagnosis_id
fields.It would be better to update PDC data as well, since the data on the repo is downloaded 7 months ago.
Some data fields are updated on PDC data.
Good catch! Apart from the examples you provided, I notice that some values have changed as well: for example, with case df4e907e-8f98-11ea-b1fd-0aad30af8a83, "days_to_last_follow_up" and "days_to_last_known_disease_status" both changed from 772 days to 1112.00 days, and "progression_or_recurrence" changed from "No" to "Yes". I guess PDC case information continues to be updated!
It would be better to update PDC data as well, since the data on the repo is downloaded 7 months ago.
I completely agree! I've updated that file in 36d4b85 (but feel free to regenerate or delete that if you notice anything wrong with this file). Otherwise, I think this PR is good to go!
This PR is updating gdc-head-and-mouth.json file to include demographic information. The query statement is also revised in Head and Mouth Cancer Datasets.ipynb
Closes #24