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cancerdatasci / ceres

Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens
BSD 3-Clause "New" or "Revised" License
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Hello, I'm in trouble with RPPanalyzer tutorial #13

Open kyoungjin97 opened 3 years ago

kyoungjin97 commented 3 years ago

Hello, I'm beginning user with github. Also I'm beginning user with R. And I'm bad at English.

And I'm in trouble with RPPanalyzer tutorial

I am following the tutorial RPPanalyzer for practice. RPPanalyzer (Version 1.0.3) Analyze reverse phase protein array data User‘s Guide Heiko Mannsperger and Stephan Gade German Cancer Research Center Heidelberg, Germany October 1, 2012

below is What I done at R

BiocManager::install("RPPanalyzer") library(RPPanalyzer)

define path to example files

dataDir <- system.file("extdata",package = "RPPanalyzer")

change working directory

setwd(dataDir)

store example sample description in a variable

sampledescription <- read.delim("sampledescription.txt") s## show sample description header head(sampledescription)

dataDir <- system.file("extdata", package = "RPPanalyzer") setwd(dataDir)

store example sample description in a variable

slidedescription <- read.delim("slidedescription.txt")

show sample description header

head(slidedescription)

and here is what i'm trouble with

rawdata <- read.Data(blocksperarray = 4, spotter = "arrayjet",printFlags = FALSE)

when if i run , i got error like this ; Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent.

How can I handle with this...?

kyoungjin97 commented 3 years ago

And if you know about RPPanalyzer pipeline with example data, please teach me.